邵毅, 姚春霞, 黄柳娟, 冯博, 周昌艳, 白冰, 王华, 王卫国. 冷鲜鸡肉表面四环素和磺胺耐药菌的菌群多样性分析[J]. 农业工程学报, 2019, 35(17): 301-308. DOI: 10.11975/j.issn.1002-6819.2019.17.036
    引用本文: 邵毅, 姚春霞, 黄柳娟, 冯博, 周昌艳, 白冰, 王华, 王卫国. 冷鲜鸡肉表面四环素和磺胺耐药菌的菌群多样性分析[J]. 农业工程学报, 2019, 35(17): 301-308. DOI: 10.11975/j.issn.1002-6819.2019.17.036
    Shao Yi, Yao Chunxia, Huang Liujuan, Feng Bo, Zhou Changyan, Bai Bing, Wang Hua, Wang Weiguo. Diversity of tetracycline- and sulfamethoxazole-resistant bacteria on surface of cold fresh chicken[J]. Transactions of the Chinese Society of Agricultural Engineering (Transactions of the CSAE), 2019, 35(17): 301-308. DOI: 10.11975/j.issn.1002-6819.2019.17.036
    Citation: Shao Yi, Yao Chunxia, Huang Liujuan, Feng Bo, Zhou Changyan, Bai Bing, Wang Hua, Wang Weiguo. Diversity of tetracycline- and sulfamethoxazole-resistant bacteria on surface of cold fresh chicken[J]. Transactions of the Chinese Society of Agricultural Engineering (Transactions of the CSAE), 2019, 35(17): 301-308. DOI: 10.11975/j.issn.1002-6819.2019.17.036

    冷鲜鸡肉表面四环素和磺胺耐药菌的菌群多样性分析

    Diversity of tetracycline- and sulfamethoxazole-resistant bacteria on surface of cold fresh chicken

    • 摘要: 为探索冷鲜鸡肉产品表面的抗生素耐药菌的菌群结构,利用IonS5TMXL测序平台对18个市售冷鲜鸡肉样品表面的可培养四环素耐药菌和磺胺耐药菌进行了研究。结果表明,2类耐药菌中分别注释出59个和58个已明确属名的属,相对丰度最大的3个门均为变形菌门、拟杆菌门和厚壁菌门。共享菌属中不动杆菌属、假单胞菌属、变形杆菌属、柠檬酸杆菌属、香味菌属和漫游球菌属的禽源和人源分离株的多重耐药性已被大量研究所证实;而禽源肉杆菌属等16个菌属的耐药特性还未见报道。各采样点分别鉴定出2~50个特有操作分类单元,分属2~36个属。该研究反映了冷鲜鸡肉表面2类耐药菌的污染状况,为后期冷鲜鸡肉产品表面耐药菌的迁移风险评估和控制技术研究提供参考。

       

      Abstract: Abstract: The increased use of antimicrobial-resistant (AR) bacteria in agricultural production has posed a great threat to human health, as AR pathogens could spread from agricultural product to human body via food chain. The antimicrobial resistance (ART) genes in animal- and environment-derived bacteria can migrates to human commensal bacteria through horizontal gene transfer (HGT). Increased evidences have shown the critical role of commensal bacteria in HGT of ART genes, affected by both size and species of ART bacteria. Because of the horizontal gene transfer, it is essential to understand antimicrobial resistance in bacterial community rather than in several species. Currently, there is a knowledge gap in our understanding of tendentious carriers of ART gene as most existing studies focused only on a limited pathogenic bacteria. Cold fresh chicken is consumed worldwide, and our previous work had found existence of tetracycline-resistant (Tetr) bacteria and sulfamethoxazole-resistant (Sulr) bacteria in chicken products which might harbor a pool of AR gene, offering a potential avenue for transmission of antimicrobial resistant bacteria and AR genes to human beings. Motivated by these findings, we randomly selected 18 cold fresh chicken samples from six supermarkets in Shanghai from September to October in 2018 to investigate possible existence of Tetr and Sulr bacteria, as well as the potential risk of antimicrobial resistance migration. The culturable Tetr and Sulr bacteria on the surface of the chicken samples were recovered by brain heart infusion (BHI) agar, containing 48 μg/mL tetracycline or 228 μg/mL sulfamethoxazole plus 12 μg/mL trimethoprim. Their diversity was analyzed by the IonS5TM XL sequencing platform. The results showed that the top three phyla with highest relative abundance of ART bacteria were Proteobacteria, Bacteroidetes and Firmicutes. In Tetr and Sulr bacteria, 59 and 58 specific genera were identified respectively. Compared with the literature report on diversity of total bacteria on surface of cold fresh chicken, the genera of the two ART bacteria found in our study accounted for a high proportion of the total microbial population, indicating that many bacteria on the surface of cold fresh chicken were resistant to the two antimicrobials. The results of shared floras found 18 genera (56 OUTs) and 19 genera (63 OUTs) in Tetr and Sulr bacteria respectively, among which the multi-drug resistance of avian and human Acinetobacter spp., Pseudomonas spp., Proteus spp., Citrobacter spp. and Myroides spp. had been well established. Thus, the potential risk of horizontal transfer of AR genes from avian to human need to further investigation. However, the characteristics of antimicrobial resistance in other 16 genera of shared floras isolated from avian, including Serratia spp., Aeromonas spp., Buttiauxella spp., Comamonas spp., Pseudochrobactrum spp., Stenotrophomonas spp., Moellerella spp., Providencia spp., Sphingomonas spp., Anaeromyxobacter spp., Empedobacter spp., Soonwooa spp., Carnobacterium spp., Weissella spp., Kurthia spp. and Lysinibacillus spp., have not been reported yet. We found that the specific floras of ART bacteria differed from each sample, and 5 to 39 unique OTUs, from three to 32 genus, were identified in samples taken from all supermarkets. The specific ART floras data could be used to trace the origin of the ART bacteria during the processing chain. Overall, our results identified existence of ART bacteria on surface of cold fresh chicken and provided reference for further investigation into their potential risk and control. Since separation of bacteria could be affected by cultural method, our diversity analysis was limited to a single culture condition and relied on establishment of analytical techniques of culture-independent in the future.

       

    /

    返回文章
    返回